PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.G27H3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 494aa    MW: 55755.3 Da    PI: 5.9552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.G27H3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.6e-12303348454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Aradu.G27H3 303 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 348
                  799***********************6.....4***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-3925192IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.57E-17299362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.015299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.92E-14302353No hitNo description
Gene3DG3DSA:4.10.280.103.1E-16303361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10303348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-16305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEDMIISPSS SSSLVSIPQE NTPTLQQKLH FLLQNQLPEW WVYGIFWHTT NDDNGNLFLS  60
WGDGHFQGAK DASSPRLIPH YPISVTDRCR KFNNNSNNNN DGEWFYMMSL TRTFPMGEAL  120
YSSLPGKAFG SGSPIWLNGD LQFCDCDRAK EAYMHGIRTL VHIPTTDGVL EMGSYDLITE  180
NWALLQQTKS LFGSQHQQLN PIQFFDDQNI SFADIGIIAG VQEEDNSHEE DAVRKRKETE  240
ALNNKKKNKD HSSMGKFRSS RQSSFVDSEH SDSDCGAPMA AAEKRLPKKR GRKPGIGRET  300
PLNHVEAERQ RREKLNHRFY ALRAVVPNVS RMDKASLLSD AVSYINELKA KIEELETQVQ  360
KESSMNNNNK KVKVETGDSM DNQSTTTTSS VDQNNNENEA AEVQVEVEVE VKMIGEEAAM  420
VRVQSESGTH PGAKLLNALR ELEFQVQHGS MWCVNESSIM LQHVLVKLPE GITMRTEQAL  480
KSSILSRLLD HHNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A2e-21181922192Transcription factor MYC3
4rs9_A2e-21181922192Transcription factor MYC3
4rqw_B2e-21181922192Transcription factor MYC3
4rqw_A2e-21181922192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968235.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A0L9VR061e-169A0A0L9VR06_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SYR31e-169A0A0S3SYR3_PHAAN; Uncharacterized protein
STRINGPOPTR_0002s17750.11e-167(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.18e-64bHLH family protein